An improved synthesis of 2′-O,4′-C-ethylene nucleic acid (ENA) and thermodynamic studies of duplex formation containing the guanosine ENA unit

M Takagi-Sato, K Morita, Y Onishi… - … Nucleotides & Nucleic …, 2020 - Taylor & Francis
M Takagi-Sato, K Morita, Y Onishi, Y Watahiki, T Ishigaki, T Akita, E Tomita, J Kawakami…
Nucleosides, Nucleotides & Nucleic Acids, 2020Taylor & Francis
Abstract Oligonucleotides containing 2′-O, 4′-C-ethylene nucleic acids (ENA) have been
proven highly effective for antisense therapeutics. 2′-O, 4′-C-Ethyleneguanosine and its
phosphoramidite were previously obtained from 3, 5-di-O-benzy1-4-C-(p-
tolulenesulfonyloxyethyl)-1, 2-di-O-acetyl-α-D-erythropentofuranose by glycosylation, but
with limited efficiency. Using 3, 5-di-O-benzy1-4-C-(2-t-butyldiphenylsilyloxyethyl)-1, 2-di-O-
acetyl-α-D-erythropentofuranose as an alternative substrate, we developed several methods …
Abstract
Oligonucleotides containing 2′-O,4′-C-ethylene nucleic acids (ENA) have been proven highly effective for antisense therapeutics. 2′-O,4′-C-Ethyleneguanosine and its phosphoramidite were previously obtained from 3,5-di-O-benzy1-4-C-(p-tolulenesulfonyloxyethyl)-1,2-di-O-acetyl-α-D-erythropentofuranose by glycosylation, but with limited efficiency. Using 3,5-di-O-benzy1-4-C-(2-t-butyldiphenylsilyloxyethyl)-1,2-di-O-acetyl-α-D-erythropentofuranose as an alternative substrate, we developed several methods to obtain 2′-O,4′-C-ethyleneguanosine derivatives with much higher yields than previously reported. These methods were also applicable for the synthesis of 2′-O,4′-C-ethyleneadenosine and 2′-O,4′-C-ethylene-5-methyluridine derivatives. Moreover, we investigated the thermodynamic benefit of DNA strands containing 2′-O,4′-C-ethyleneguanosines during duplex formation with complementary RNA. Only a single modification by the nucleoside resulted in a 10-fold greater binding constant of the DNA/RNA duplex.
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